From 2eeb038d86802ef8fa76b2a8729f7dabd502b276 Mon Sep 17 00:00:00 2001
From: Simon Wittl <simon.wittl@th-deg.de>
Date: Sat, 13 Jul 2024 13:37:56 +0200
Subject: [PATCH] rm loadertest
---
test/test_rq_json_loader.py | 133 ------------------------------------
1 file changed, 133 deletions(-)
delete mode 100644 test/test_rq_json_loader.py
diff --git a/test/test_rq_json_loader.py b/test/test_rq_json_loader.py
deleted file mode 100644
index 546e012..0000000
--- a/test/test_rq_json_loader.py
+++ /dev/null
@@ -1,133 +0,0 @@
-import pytest
-import numpy as np
-from pathlib import Path
-from unittest.mock import MagicMock, patch
-
-# Importing symbols from loader module
-from rq_controller.common import PyProjection, PyProjectionGeometry, PyRegionOfIntrest, PyVolume
-import pyometiff
-
-from rq_controller.common.io.rq_json import RqJsonLoader
-
-
-class MockOMETIFFReader:
- def __init__(self, data):
- self.data = data
-
- def read(self):
- return self.data, None, None
-
-
-@pytest.fixture
-def rq_json_loader() -> RqJsonLoader:
- return RqJsonLoader()
-
-
-@pytest.fixture
-def mock_load_json():
- # Mocking the load_json method to avoid actual file operations
- with patch.object(RqJsonLoader, 'load_json') as mock:
- mock.return_value = {
- 'focal_spot_mm': np.array([1.0, 1.1, 1.2]),
- 'detector_postion_mm': np.array([2.0, 2.1, 2.2]),
- 'detector_orientation_quad': np.array([3.0, 3.1, 3.2]),
- 'frame_id': 'frame1',
- 'focal_spot_orientation_quad': np.array([4.0, 4.1, 4.2]),
- 'detector_heigth_mm': 5.0,
- 'detector_width_mm': 6.0,
- 'voltage_kv': 7.0,
- 'current_ua': 8.0,
- 'exposure_time_ms': 9.0,
- 'center_points_mm': [10.0, 11.0, 12.0],
- 'dimensions_mm': [13.0, 14.0, 15.0],
- 'resolution_mm': [16.0, 17.0, 18.0]
- }
- yield mock
-
-
-def test_initialization(rq_json_loader):
- assert rq_json_loader.porjection_geometry_suffix == '.geom-json'
- assert rq_json_loader.projection_suffix == '.tif'
- assert rq_json_loader.region_of_intrest_suffix == '.roi-json'
- assert rq_json_loader.volume_suffix == '.ome.tiff'
-
-
-def test_load_projection_geometry(rq_json_loader, mock_load_json):
- load_path = Path('/fake/path.tif')
- projection_geometry = rq_json_loader.load_projection_geometry(load_path)
- assert isinstance(projection_geometry, PyProjectionGeometry)
- # Add more assertions as needed based on your implementation
-
-
-def test_load_projection(rq_json_loader, mock_load_json):
- load_path = Path('/fake/path.tif')
- projection = rq_json_loader.load_projection(load_path)
- assert isinstance(projection, PyProjection)
- # Add more assertions as needed based on your implementation
-
-
-def test_load_region_of_intrest(rq_json_loader, mock_load_json):
- load_path = Path('/fake/path.roi-json')
- region_of_intrest = rq_json_loader.load_region_of_intrest(load_path)
- assert isinstance(region_of_intrest, PyRegionOfIntrest)
- # Add more assertions as needed based on your implementation
-
-
-def test_load_volume(rq_json_loader, mock_load_json):
- load_path = Path('/fake/path.ome.tiff')
- with patch('pyometiff.OMETIFFReader', MockOMETIFFReader):
- volume = rq_json_loader.load_volume(load_path)
- assert isinstance(volume, PyVolume)
- # Add more assertions as needed based on your implementation
-
-
-def test_load_projection_geometry_raises_not_implemented(rq_json_loader):
- load_path = Path('/fake/path.tif')
- with pytest.raises(NotImplementedError):
- rq_json_loader.load_projection_geometry(load_path)
-
-
-def test_load_projection_raises_not_implemented(rq_json_loader):
- load_path = Path('/fake/path.tif')
- with pytest.raises(NotImplementedError):
- rq_json_loader.load_projection(load_path)
-
-
-def test_load_region_of_intrest_raises_not_implemented(rq_json_loader):
- load_path = Path('/fake/path.roi-json')
- with pytest.raises(NotImplementedError):
- rq_json_loader.load_region_of_intrest(load_path)
-
-
-def test_load_volume_raises_not_implemented(rq_json_loader):
- load_path = Path('/fake/path.ome.tiff')
- with pytest.raises(NotImplementedError):
- rq_json_loader.load_volume(load_path)
-
-
-def test_load_json(rq_json_loader):
- load_path = Path('/fake/path.json')
- data_dict = {
- 'focal_spot_mm': np.array([1.0]),
- 'detector_postion_mm': np.array([2.0]),
- 'detector_orientation_quad': np.array([3.0]),
- 'frame_id': 'frame1',
- 'focal_spot_orientation_quad': np.array([4.0])
- }
- with patch('builtins.open', MagicMock(return_value=MagicMock(spec=open))):
- with patch('json.load', MagicMock(return_value=data_dict)):
- result = rq_json_loader.load_json(load_path)
- assert result == data_dict
-
-
-def test_load_json_file_not_found(rq_json_loader):
- load_path = Path('/fake/path.json')
- with pytest.raises(FileNotFoundError):
- rq_json_loader.load_json(load_path)
-
-
-def test_load_volume_invalid_dtype(rq_json_loader, mock_load_json):
- load_path = Path('/fake/path.ome.tiff')
- with patch('pyometiff.OMETIFFReader', MockOMETIFFReader):
- with pytest.raises(ValueError):
- rq_json_loader.load_volume(load_path)
--
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